HL_5AJ4_063
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUAAACCCCG
- Length
- 12 nucleotides
- Bulged bases
- 5AJ4|1|AA|C|576
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_063 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2834
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5AJ4|1|AA|C|567
5AJ4|1|AA|G|568
5AJ4|1|AA|A|569
5AJ4|1|AA|U|570
5AJ4|1|AA|A|571
5AJ4|1|AA|A|572
5AJ4|1|AA|A|573
5AJ4|1|AA|C|574
5AJ4|1|AA|C|575
5AJ4|1|AA|C|576
5AJ4|1|AA|C|577
5AJ4|1|AA|G|578
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AI
- MITORIBOSOMAL PROTEIN US9M, MRPS9
- Chain AJ
- MITORIBOSOMAL PROTEIN US10M, MRPS10
- Chain AN
- MITORIBOSOMAL PROTEIN US14M, MRPS14
- Chain AV
- P-SITE AND A-SITE TRNA
- Chain AY
- P-SITE AND A-SITE TRNA
Coloring options: