HL_5AJ4_068
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- (P5P)(Y5P)(Y5P)(P5P)(P5P)(P5P)(P5P)(P5P)(Y5P)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: P5P, Y5P
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_068 not in the Motif Atlas
- Geometric match to HL_2AZX_005
- Geometric discrepancy: 0.2482
- The information below is about HL_2AZX_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5AJ4|1|BB|P5P|32
5AJ4|1|BB|Y5P|33
5AJ4|1|BB|Y5P|34
5AJ4|1|BB|P5P|35
5AJ4|1|BB|P5P|36
5AJ4|1|BB|P5P|37
5AJ4|1|BB|P5P|38
5AJ4|1|BB|P5P|39
5AJ4|1|BB|Y5P|40
Current chains
- Chain BB
- MITORIBOSOMAL CP TRNA
Nearby chains
- Chain B0
- MITORIBOSOMAL PROTEIN BL27M, MRPL27
- Chain B4
- MITORIBOSOMAL PROTEIN BL31M, MRPL55
- Chain BS
- MITORIBOSOMAL PROTEIN UL18M, MRPL18
- Chain Bb
- MITORIBOSOMAL PROTEIN ML38, MRPL38
- Chain Bd
- MITORIBOSOMAL PROTEIN ML40, MRPL40
- Chain Bj
- MITORIBOSOMAL PROTEIN ML46, MRPL46
- Chain Bk
- MITORIBOSOMAL PROTEIN ML48, MRPL48
Coloring options: