HL_5AJ4_070
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAAACAUU
- Length
- 8 nucleotides
- Bulged bases
- 5AJ4|1|BA|A|56, 5AJ4|1|BA|A|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_070 not in the Motif Atlas
- Geometric match to HL_8CRE_001
- Geometric discrepancy: 0.1866
- The information below is about HL_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5AJ4|1|BA|A|54
5AJ4|1|BA|A|55
5AJ4|1|BA|A|56
5AJ4|1|BA|A|57
5AJ4|1|BA|C|58
5AJ4|1|BA|A|59
5AJ4|1|BA|U|60
5AJ4|1|BA|U|61
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B1
- MITORIBOSOMAL PROTEIN BL28M, MRPL28
- Chain BI
- MITORIBOSOMAL PROTEIN BL9M, MRPL9
- Chain BP
- MITORIBOSOMAL PROTEIN UL15M, MRPL15
- Chain Bn
- MITORIBOSOMAL PROTEIN ML51, MRPL51
Coloring options: