HL_5APO_067
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 5APO|1|5|G|3116||||P_1, 5APO|1|5|C|3120||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5APO_067 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.0734
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
5APO|1|5|C|3110||||P_1
5APO|1|5|U|3111||||P_1
5APO|1|5|G|3112||||P_1
5APO|1|5|A|3113||||P_1
5APO|1|5|A|3114||||P_1
5APO|1|5|C|3115||||P_1
5APO|1|5|G|3116||||P_1
5APO|1|5|C|3117||||P_1
5APO|1|5|C|3118||||P_1
5APO|1|5|U|3119||||P_1
5APO|1|5|C|3120||||P_1
5APO|1|5|U|3121||||P_1
5APO|1|5|A|3122||||P_1
5APO|1|5|A|3123||||P_1
5APO|1|5|G|3124||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain O
- 60S ribosomal protein L16-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
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