HL_5B2Q_001

3D structure

PDB id

5B2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Francisella novicida Cas9 RHA in complex with sgRNA and target DNA (TGG PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

1.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30528.1

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

400

Unit IDs

5B2Q|1|B|C|35
5B2Q|1|B|G|36
5B2Q|1|B|A|37
5B2Q|1|B|A|38
5B2Q|1|B|A|39
5B2Q|1|B|G|40

Current chains

Chain B

Guide RNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9