HL_5BR8_008
3D structure
- PDB id
- 5BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CACUGAGACACGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5BR8_008 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.0716
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39665.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5BR8|1|A|C|320
5BR8|1|A|A|321
5BR8|1|A|C|322
5BR8|1|A|U|323
5BR8|1|A|G|324
5BR8|1|A|A|325
5BR8|1|A|G|326
5BR8|1|A|A|327
5BR8|1|A|C|328
5BR8|1|A|A|329
5BR8|1|A|C|330
5BR8|1|A|G|331
5BR8|1|A|G|332
5BR8|1|A|G|333
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
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