HL_5CD4_002

3D structure

PDB id

5CD4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Type IE CRISPR Cascade complex from E. coli, with two assemblies in the asymmetric unit arranged back-to-back

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

5CD4|1|X|C|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5CD4_002 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.2332

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_58375.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5CD4|1|X|C|51
5CD4|1|X|G|52
5CD4|1|X|C|53
5CD4|1|X|C|54
5CD4|1|X|A|55
5CD4|1|X|G|56

Current chains

Chain X

crRNA

Nearby chains

Chain M

CRISPR system Cascade subunit CasE