HL_5CZP_115

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5CZP_115 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0805

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5CZP|1|XA|C|320
5CZP|1|XA|A|321
5CZP|1|XA|C|322
5CZP|1|XA|U|323
5CZP|1|XA|G|324
5CZP|1|XA|A|325
5CZP|1|XA|G|326
5CZP|1|XA|A|327
5CZP|1|XA|C|328
5CZP|1|XA|A|329
5CZP|1|XA|C|330
5CZP|1|XA|G|331
5CZP|1|XA|G|332
5CZP|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20