HL_5CZP_168

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

5CZP|1|YA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5CZP_168 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.3777

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

5CZP|1|YA|C|884
5CZP|1|YA|C|885
5CZP|1|YA|C|886
5CZP|1|YA|A|887
5CZP|1|YA|C|888
5CZP|1|YA|C|889
5CZP|1|YA|A|890
5CZP|1|YA|G|892

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13