HL_5D0B_001

3D structure

PDB id

5D0B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of epoxyqueuosine reductase with a tRNA-TYR epoxyqueuosine-modified tRNA stem loop

Experimental method

X-RAY DIFFRACTION

Resolution

2.64 Å

Loop

Sequence

U(56B)UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 56B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13189.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5D0B|1|F|U|33
5D0B|1|F|56B|34
5D0B|1|F|U|35
5D0B|1|F|A|36
5D0B|1|F|A|37

Current chains

Chain F

RNA (5'-D(*GP*CP*AP*GP*AP*CP*UP*(56B)P*UP*AP*AP*AP*UP*CP*UP*GP*C)-3')

Nearby chains

Chain A

Epoxyqueuosine reductase