3D structure

PDB id
5D5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_85603.1
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
304

Unit IDs

5D5L|1|A|C|8
5D5L|1|A|G|9
5D5L|1|A|A|10
5D5L|1|A|A|11
5D5L|1|A|A|12
5D5L|1|A|G|13

Current chains

Chain A
PreQ1-II riboswitch

Nearby chains

Chain C
PreQ1-II riboswitch

Coloring options:

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