HL_5D5L_002

3D structure

PDB id

5D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UACUUAUUUCCUUUGA

Length

16 nucleotides

Bulged bases

5D5L|1|A|A|33, 5D5L|1|A|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5D5L|1|A|U|28
5D5L|1|A|A|29
5D5L|1|A|C|30
5D5L|1|A|U|31
5D5L|1|A|U|32
5D5L|1|A|A|33
5D5L|1|A|U|34
5D5L|1|A|U|35
5D5L|1|A|U|36
5D5L|1|A|C|37
5D5L|1|A|C|38
5D5L|1|A|U|39
5D5L|1|A|U|40
5D5L|1|A|U|41
5D5L|1|A|G|42
5D5L|1|A|A|43

Current chains

Chain A

PreQ1-II riboswitch

Nearby chains

Chain B

PreQ1-II riboswitch

Chain D

PreQ1-II riboswitch