HL_5DAT_085

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

5DAT|1|2|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|G|486
5DAT|1|2|G|487
5DAT|1|2|G|488
5DAT|1|2|C|489
5DAT|1|2|C|490
5DAT|1|2|C|491
5DAT|1|2|A|492
5DAT|1|2|U|493
5DAT|1|2|U|494
5DAT|1|2|C|495
5DAT|1|2|G|496
5DAT|1|2|G|497
5DAT|1|2|G|498
5DAT|1|2|U|499
5DAT|1|2|C|500
5DAT|1|2|U|501

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S9

40S ribosomal protein S9-A