HL_5DAT_107

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUGCUUAGAGAAGGGGGCAACUCCAUCUCAGAGCGG

Length

36 nucleotides

Bulged bases

5DAT|1|2|G|1699, 5DAT|1|2|A|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|C|1683
5DAT|1|2|U|1684
5DAT|1|2|G|1685
5DAT|1|2|C|1686
5DAT|1|2|U|1687
5DAT|1|2|U|1688
5DAT|1|2|A|1689
5DAT|1|2|G|1690
5DAT|1|2|A|1691
5DAT|1|2|G|1692
5DAT|1|2|A|1693
5DAT|1|2|A|1694
5DAT|1|2|G|1695
5DAT|1|2|G|1696
5DAT|1|2|G|1697
5DAT|1|2|G|1698
5DAT|1|2|G|1699
5DAT|1|2|C|1700
5DAT|1|2|A|1701
5DAT|1|2|A|1702
5DAT|1|2|C|1703
5DAT|1|2|U|1704
5DAT|1|2|C|1705
5DAT|1|2|C|1706
5DAT|1|2|A|1707
5DAT|1|2|U|1708
5DAT|1|2|C|1709
5DAT|1|2|U|1710
5DAT|1|2|C|1711
5DAT|1|2|A|1712
5DAT|1|2|G|1713
5DAT|1|2|A|1714
5DAT|1|2|G|1715
5DAT|1|2|C|1716
5DAT|1|2|G|1717
5DAT|1|2|G|1718

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A