HL_5DAT_113

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

5DAT|1|4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DAT_113 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1053

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5DAT|1|4|G|124
5DAT|1|4|U|125
5DAT|1|4|A|126
5DAT|1|4|U|127
5DAT|1|4|U|128
5DAT|1|4|C|129

Current chains

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA