HL_5DAT_201

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUCCGAUUUUUUCGUAC

Length

17 nucleotides

Bulged bases

5DAT|1|6|U|666, 5DAT|1|6|U|667

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DAT_201 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2882

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

5DAT|1|6|G|656
5DAT|1|6|U|657
5DAT|1|6|C|658
5DAT|1|6|C|659
5DAT|1|6|G|660
5DAT|1|6|A|661
5DAT|1|6|U|662
5DAT|1|6|U|663
5DAT|1|6|U|664
5DAT|1|6|U|665
5DAT|1|6|U|666
5DAT|1|6|U|667
5DAT|1|6|C|668
5DAT|1|6|G|669
5DAT|1|6|U|670
5DAT|1|6|A|673
5DAT|1|6|C|674

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d1

40S ribosomal protein S21-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A