HL_5DAT_202

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UCCUUGUGG

Length

9 nucleotides

Bulged bases

5DAT|1|6|U|718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DAT_202 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.2357

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5DAT|1|6|U|715
5DAT|1|6|C|716
5DAT|1|6|C|717
5DAT|1|6|U|718
5DAT|1|6|U|719
5DAT|1|6|G|720
5DAT|1|6|U|721
5DAT|1|6|G|722
5DAT|1|6|G|723

Current chains

Chain 6

18S ribosomal RNA

Nearby chains