HL_5DAT_237

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

5DAT|1|5|U|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DAT_237 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3044

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

5DAT|1|5|G|542
5DAT|1|5|C|543
5DAT|1|5|C|544
5DAT|1|5|U|545
5DAT|1|5|C|546
5DAT|1|5|G|547
5DAT|1|5|G|548
5DAT|1|5|U|549

Current chains

Chain 5

25S ribosomal RNA

Nearby chains