HL_5DC3_005

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

5DC3|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DC3_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.0892

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5DC3|1|1|U|194
5DC3|1|1|U|195
5DC3|1|1|G|196
5DC3|1|1|G|197
5DC3|1|1|A|198
5DC3|1|1|A|199
5DC3|1|1|C|200
5DC3|1|1|A|201

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N6

60S ribosomal protein L26-A

Chain O2

60S ribosomal protein L32