HL_5DC3_085

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5DC3|1|2|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DC3_085 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3839

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5DC3|1|2|C|491
5DC3|1|2|A|492
5DC3|1|2|U|493
5DC3|1|2|U|494
5DC3|1|2|C|495
5DC3|1|2|G|496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains