HL_5DC3_088

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCCGGUCGGAUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|2|G|652
5DC3|1|2|C|653
5DC3|1|2|C|654
5DC3|1|2|G|655
5DC3|1|2|G|656
5DC3|1|2|U|657
5DC3|1|2|C|658
5DC3|1|2|G|676
5DC3|1|2|G|677
5DC3|1|2|A|678
5DC3|1|2|U|679
5DC3|1|2|U|680
5DC3|1|2|U|681
5DC3|1|2|C|682

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A