HL_5DC3_089

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5DC3|1|2|U|719, 5DC3|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|2|G|703
5DC3|1|2|C|704
5DC3|1|2|U|705
5DC3|1|2|A|706
5DC3|1|2|A|707
5DC3|1|2|C|708
5DC3|1|2|C|709
5DC3|1|2|U|710
5DC3|1|2|U|711
5DC3|1|2|G|712
5DC3|1|2|A|713
5DC3|1|2|G|714
5DC3|1|2|U|715
5DC3|1|2|C|716
5DC3|1|2|C|717
5DC3|1|2|U|718
5DC3|1|2|U|719
5DC3|1|2|G|720
5DC3|1|2|U|721
5DC3|1|2|G|722
5DC3|1|2|G|723
5DC3|1|2|C|724
5DC3|1|2|U|725
5DC3|1|2|C|726
5DC3|1|2|U|727
5DC3|1|2|U|728
5DC3|1|2|G|729
5DC3|1|2|G|730
5DC3|1|2|C|731
5DC3|1|2|G|732
5DC3|1|2|A|733
5DC3|1|2|A|734
5DC3|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A