HL_5DC3_199

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

ACAGGGCCCAUUCGGGUCUUGU

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DC3_199 not in the Motif Atlas

Homologous match to HL_8P9A_202

Geometric discrepancy: 0.2326

The information below is about HL_8P9A_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|6|A|483
5DC3|1|6|C|484
5DC3|1|6|A|485
5DC3|1|6|G|486
5DC3|1|6|G|487
5DC3|1|6|G|488
5DC3|1|6|C|489
5DC3|1|6|C|490
5DC3|1|6|C|491
5DC3|1|6|A|492
5DC3|1|6|U|493
5DC3|1|6|U|494
5DC3|1|6|C|495
5DC3|1|6|G|496
5DC3|1|6|G|497
5DC3|1|6|G|498
5DC3|1|6|U|499
5DC3|1|6|C|500
5DC3|1|6|U|501
5DC3|1|6|U|502
5DC3|1|6|G|503
5DC3|1|6|U|504

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A