HL_5DC3_202

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUCCGAUUUUUUCGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|6|G|656
5DC3|1|6|U|657
5DC3|1|6|C|658
5DC3|1|6|C|659
5DC3|1|6|G|660
5DC3|1|6|A|661
5DC3|1|6|U|662
5DC3|1|6|U|663
5DC3|1|6|U|664
5DC3|1|6|U|665
5DC3|1|6|U|666
5DC3|1|6|U|667
5DC3|1|6|C|668
5DC3|1|6|G|669
5DC3|1|6|U|670
5DC3|1|6|A|673
5DC3|1|6|C|674

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d1

40S ribosomal protein S21-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A