3D structure

PDB id
5DDO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAUUGCACUCCG
Length
12 nucleotides
Bulged bases
5DDO|1|A|C|39
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_98984.5
Basepair signature
cWW-F
Number of instances in this motif group
31

Unit IDs

5DDO|1|A|C|34
5DDO|1|A|A|35
5DDO|1|A|U|36
5DDO|1|A|U|37
5DDO|1|A|G|38
5DDO|1|A|C|39
5DDO|1|A|A|40
5DDO|1|A|C|41
5DDO|1|A|U|42
5DDO|1|A|C|43
5DDO|1|A|C|44
5DDO|1|A|G|45

Current chains

Chain A
L-glutamine riboswitch (58-MER)

Nearby chains

Chain G
U1 small nuclear ribonucleoprotein A

Coloring options:

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