HL_5DEA_001

3D structure

PDB id

5DEA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the complex between human FMRP RGG motif and G-quadruplex RNA, cesium bound form.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGUGGAAGGAGUGGCUGGGUUG

Length

22 nucleotides

Bulged bases

5DEA|1|A|U|10, 5DEA|1|A|A|13, 5DEA|1|A|A|14, 5DEA|1|A|U|19, 5DEA|1|A|C|22, 5DEA|1|A|U|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88830.1

Basepair signature

cWW-tSW-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-cWH-cWH

Number of instances in this motif group

1

Unit IDs

5DEA|1|A|U|8
5DEA|1|A|G|9
5DEA|1|A|U|10
5DEA|1|A|G|11
5DEA|1|A|G|12
5DEA|1|A|A|13
5DEA|1|A|A|14
5DEA|1|A|G|15
5DEA|1|A|G|16
5DEA|1|A|A|17
5DEA|1|A|G|18
5DEA|1|A|U|19
5DEA|1|A|G|20
5DEA|1|A|G|21
5DEA|1|A|C|22
5DEA|1|A|U|23
5DEA|1|A|G|24
5DEA|1|A|G|25
5DEA|1|A|G|26
5DEA|1|A|U|27
5DEA|1|A|U|28
5DEA|1|A|G|29

Current chains

Chain A

sc1

Nearby chains

Chain B

Fragile X mental retardation protein 1