HL_5DFE_003

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_003 not in the Motif Atlas

Homologous match to HL_6CZR_074

Geometric discrepancy: 0.1834

The information below is about HL_6CZR_074

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5DFE|1|QA|G|158
5DFE|1|QA|G|159
5DFE|1|QA|A|160
5DFE|1|QA|A|161
5DFE|1|QA|A|162
5DFE|1|QA|C|163

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20