HL_5DFE_009

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5DFE|1|QA|A|344

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_009 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.1486

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

5DFE|1|QA|C|342
5DFE|1|QA|U|343
5DFE|1|QA|A|344
5DFE|1|QA|C|345
5DFE|1|QA|G|346
5DFE|1|QA|G|347

Current chains

Chain QA

16S rRNA

Nearby chains

Chain RO

50S ribosomal protein L14

Chain RT

50S ribosomal protein L19