3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCUCAAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DFE_014 not in the Motif Atlas
Homologous match to HL_4LFB_014
Geometric discrepancy: 0.0573
The information below is about HL_4LFB_014
Detailed Annotation
GNRA-like with tWH
Broad Annotation
GNRA
Motif group
HL_86621.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

5DFE|1|QA|G|617
5DFE|1|QA|C|618
5DFE|1|QA|U|619
5DFE|1|QA|C|620
5DFE|1|QA|A|621
5DFE|1|QA|A|622
5DFE|1|QA|C|623

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain QP
30S ribosomal protein S16

Coloring options:


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