HL_5DFE_027

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_027 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.1151

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5DFE|1|QA|C|1165
5DFE|1|QA|G|1166
5DFE|1|QA|A|1168
5DFE|1|QA|A|1169
5DFE|1|QA|A|1170
5DFE|1|QA|G|1171

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2