3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAUCAGCCAUGC
Length
12 nucleotides
Bulged bases
5DFE|1|QA|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DFE_030 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.0543
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_86432.1
Basepair signature
cWW-tWH-tWH-F-F-F
Number of instances in this motif group
5

Unit IDs

5DFE|1|QA|G|1356
5DFE|1|QA|A|1357
5DFE|1|QA|U|1358
5DFE|1|QA|C|1359
5DFE|1|QA|A|1360
5DFE|1|QA|G|1361
5DFE|1|QA|C|1362
5DFE|1|QA|C|1363|||A
5DFE|1|QA|A|1363|||B
5DFE|1|QA|U|1364
5DFE|1|QA|G|1365
5DFE|1|QA|C|1366

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QC
30S ribosomal protein S3
Chain QI
30S ribosomal protein S9
Chain QJ
30S ribosomal protein S10
Chain QN
30S ribosomal protein S14 type Z
Chain QU
30S ribosomal protein Thx

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4519 s