3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGGAAC
Length
6 nucleotides
Bulged bases
5DFE|1|RA|G|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DFE_038 not in the Motif Atlas
Homologous match to HL_4WF9_003
Geometric discrepancy: 0.0623
The information below is about HL_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.6
Basepair signature
cWW-F
Number of instances in this motif group
21

Unit IDs

5DFE|1|RA|G|123
5DFE|1|RA|G|124
5DFE|1|RA|G|125
5DFE|1|RA|A|126
5DFE|1|RA|A|127
5DFE|1|RA|C|128

Current chains

Chain RA
T23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34
Chain RX
50S ribosomal protein L23

Coloring options:


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