HL_5DFE_061

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

5DFE|1|RA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_061 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.3867

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

5DFE|1|RA|C|884
5DFE|1|RA|C|885
5DFE|1|RA|C|886
5DFE|1|RA|A|887
5DFE|1|RA|C|888
5DFE|1|RA|C|889
5DFE|1|RA|A|890
5DFE|1|RA|G|892

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13