HL_5DFE_075

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5DFE|1|RA|A|1614, 5DFE|1|RA|A|1616, 5DFE|1|RA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_075 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0536

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5DFE|1|RA|C|1612
5DFE|1|RA|G|1613
5DFE|1|RA|A|1614
5DFE|1|RA|C|1615
5DFE|1|RA|A|1616
5DFE|1|RA|C|1617
5DFE|1|RA|A|1618
5DFE|1|RA|G|1619

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RW

50S ribosomal protein L22