3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CG(PSU)AAC(5MU)A(PSU)AA(4OC)G
Length
13 nucleotides
Bulged bases
5DFE|1|RA|A|1913, 5DFE|1|RA|C|1914, 5DFE|1|RA|A|1916
QA status
Modified nucleotides: PSU, 5MU, 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DFE_083 not in the Motif Atlas
Homologous match to HL_7RQB_048
Geometric discrepancy: 0.0734
The information below is about HL_7RQB_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5DFE|1|RA|C|1909
5DFE|1|RA|G|1910
5DFE|1|RA|PSU|1911
5DFE|1|RA|A|1912
5DFE|1|RA|A|1913
5DFE|1|RA|C|1914
5DFE|1|RA|5MU|1915
5DFE|1|RA|A|1916
5DFE|1|RA|PSU|1917
5DFE|1|RA|A|1918
5DFE|1|RA|A|1919
5DFE|1|RA|4OC|1920
5DFE|1|RA|G|1921

Current chains

Chain RA
T23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain QV
Transfer RNA; tRNA
Chain QY
Peptide chain release factor 2

Coloring options:


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