HL_5DFE_088
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5DFE|1|RA|G|2250
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DFE_088 not in the Motif Atlas
- Homologous match to HL_4WF9_049
- Geometric discrepancy: 0.0974
- The information below is about HL_4WF9_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
5DFE|1|RA|C|2248
5DFE|1|RA|U|2249
5DFE|1|RA|G|2250
5DFE|1|RA|OMG|2251
5DFE|1|RA|G|2252
5DFE|1|RA|G|2253
5DFE|1|RA|C|2254
5DFE|1|RA|G|2255
5DFE|1|RA|G|2256
Current chains
- Chain RA
- T23S rRNA
Nearby chains
- Chain QV
- Transfer RNA; tRNA
- Chain QY
- Peptide chain release factor 2
- Chain R0
- 50S ribosomal protein L27
- Chain RQ
- 50S ribosomal protein L16
Coloring options: