HL_5DFE_114

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_114 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0806

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5DFE|1|XA|C|320
5DFE|1|XA|A|321
5DFE|1|XA|C|322
5DFE|1|XA|U|323
5DFE|1|XA|G|324
5DFE|1|XA|A|325
5DFE|1|XA|G|326
5DFE|1|XA|A|327
5DFE|1|XA|C|328
5DFE|1|XA|A|329
5DFE|1|XA|C|330
5DFE|1|XA|G|331
5DFE|1|XA|G|332
5DFE|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20