3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGAAAGCC
Length
9 nucleotides
Bulged bases
5DFE|1|YA|G|329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DFE_153 not in the Motif Atlas
Homologous match to HL_7RQB_012
Geometric discrepancy: 0.0629
The information below is about HL_7RQB_012
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.9
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
19

Unit IDs

5DFE|1|YA|G|327
5DFE|1|YA|U|328
5DFE|1|YA|G|329
5DFE|1|YA|A|330
5DFE|1|YA|A|331
5DFE|1|YA|A|332
5DFE|1|YA|G|333
5DFE|1|YA|C|334
5DFE|1|YA|C|335

Current chains

Chain YA
T23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YY
50S ribosomal protein L24

Coloring options:


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