HL_5DFE_154

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5DFE|1|YA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_154 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0583

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5DFE|1|YA|G|382
5DFE|1|YA|U|383
5DFE|1|YA|U|384
5DFE|1|YA|C|385
5DFE|1|YA|G|386
5DFE|1|YA|U|387
5DFE|1|YA|G|388
5DFE|1|YA|G|389
5DFE|1|YA|A|390
5DFE|1|YA|G|391
5DFE|1|YA|C|392

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YP

50S ribosomal protein L15