HL_5DFE_155

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5DFE|1|YA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_155 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0655

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5DFE|1|YA|G|410
5DFE|1|YA|G|411
5DFE|1|YA|A|412
5DFE|1|YA|C|413
5DFE|1|YA|C|414
5DFE|1|YA|A|415
5DFE|1|YA|C|416
5DFE|1|YA|C|417

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain YP

50S ribosomal protein L15