HL_5DFE_165

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

5DFE|1|YA|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_165 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0337

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5DFE|1|YA|U|779
5DFE|1|YA|G|780
5DFE|1|YA|A|781
5DFE|1|YA|A|782
5DFE|1|YA|A|783
5DFE|1|YA|A|784
5DFE|1|YA|G|785

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2