3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUUAAUAUUC
Length
10 nucleotides
Bulged bases
5DFE|1|YA|U|1396, 5DFE|1|YA|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DFE_176 not in the Motif Atlas
Homologous match to HL_7RQB_036
Geometric discrepancy: 0.0551
The information below is about HL_7RQB_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69023.2
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

5DFE|1|YA|G|1389
5DFE|1|YA|U|1390
5DFE|1|YA|U|1391
5DFE|1|YA|A|1392
5DFE|1|YA|A|1393
5DFE|1|YA|U|1394
5DFE|1|YA|A|1395
5DFE|1|YA|U|1396
5DFE|1|YA|U|1397
5DFE|1|YA|C|1398

Current chains

Chain YA
T23S rRNA

Nearby chains

Chain YX
50S ribosomal protein L23

Coloring options:


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