HL_5DFE_177

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

5DFE|1|YA|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_177 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.0462

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5DFE|1|YA|C|1451
5DFE|1|YA|A|1452
5DFE|1|YA|U|1453
5DFE|1|YA|G|1455
5DFE|1|YA|G|1456
5DFE|1|YA|A|1457
5DFE|1|YA|C|1458
5DFE|1|YA|G|1459

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17