3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGUAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DFE_187 not in the Motif Atlas
Homologous match to HL_7RQB_046
Geometric discrepancy: 0.058
The information below is about HL_7RQB_046
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

5DFE|1|YA|C|1806
5DFE|1|YA|G|1807
5DFE|1|YA|U|1808
5DFE|1|YA|A|1809
5DFE|1|YA|A|1810
5DFE|1|YA|G|1811

Current chains

Chain YA
T23S rRNA

Nearby chains

Chain Y1
50S ribosomal protein L28
Chain YD
50S ribosomal protein L2

Coloring options:


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