HL_5DFE_187
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DFE_187 not in the Motif Atlas
- Homologous match to HL_7RQB_046
- Geometric discrepancy: 0.058
- The information below is about HL_7RQB_046
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_35490.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 299
Unit IDs
5DFE|1|YA|C|1806
5DFE|1|YA|G|1807
5DFE|1|YA|U|1808
5DFE|1|YA|A|1809
5DFE|1|YA|A|1810
5DFE|1|YA|G|1811
Current chains
- Chain YA
- T23S rRNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain YD
- 50S ribosomal protein L2
Coloring options: