HL_5DFE_209

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5DFE|1|YA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_209 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0435

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5DFE|1|YA|G|2819
5DFE|1|YA|A|2820
5DFE|1|YA|A|2821
5DFE|1|YA|G|2822
5DFE|1|YA|A|2823
5DFE|1|YA|C|2824
5DFE|1|YA|C|2825
5DFE|1|YA|A|2826
5DFE|1|YA|C|2827

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17

Chain YT

50S ribosomal protein L19