HL_5DGE_001
3D structure
- PDB id
- 5DGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CUGAACUUAAGCAUAUCAAUAAG
- Length
- 23 nucleotides
- Bulged bases
- 5DGE|1|1|A|40, 5DGE|1|1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGE|1|1|C|31
5DGE|1|1|U|32
5DGE|1|1|G|33
5DGE|1|1|A|34
5DGE|1|1|A|35
5DGE|1|1|C|36
5DGE|1|1|U|37
5DGE|1|1|U|38
5DGE|1|1|A|39
5DGE|1|1|A|40
5DGE|1|1|G|41
5DGE|1|1|C|42
5DGE|1|1|A|43
5DGE|1|1|U|44
5DGE|1|1|A|45
5DGE|1|1|U|46
5DGE|1|1|C|47
5DGE|1|1|A|48
5DGE|1|1|A|49
5DGE|1|1|U|50
5DGE|1|1|A|51
5DGE|1|1|A|52
5DGE|1|1|G|53
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain N8
- 60S ribosomal protein L28
- Chain O7
- 60S ribosomal protein L37-A
- Chain Q2
- 60S ribosomal protein L42-A
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