HL_5DGE_053

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAAUUCAUUUUCC

Length

14 nucleotides

Bulged bases

5DGE|1|1|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|1|G|2533
5DGE|1|1|G|2534
5DGE|1|1|A|2535
5DGE|1|1|A|2536
5DGE|1|1|U|2537
5DGE|1|1|U|2538
5DGE|1|1|C|2539
5DGE|1|1|A|2540
5DGE|1|1|U|2541
5DGE|1|1|U|2542
5DGE|1|1|U|2543
5DGE|1|1|U|2544
5DGE|1|1|C|2545
5DGE|1|1|C|2546

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain L8

60S ribosomal protein L8-A

Chain S1

40S ribosomal protein S1-A