HL_5DGE_088

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5DGE|1|2|U|719, 5DGE|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|2|G|703
5DGE|1|2|C|704
5DGE|1|2|U|705
5DGE|1|2|A|706
5DGE|1|2|A|707
5DGE|1|2|C|708
5DGE|1|2|C|709
5DGE|1|2|U|710
5DGE|1|2|U|711
5DGE|1|2|G|712
5DGE|1|2|A|713
5DGE|1|2|G|714
5DGE|1|2|U|715
5DGE|1|2|C|716
5DGE|1|2|C|717
5DGE|1|2|U|718
5DGE|1|2|U|719
5DGE|1|2|G|720
5DGE|1|2|U|721
5DGE|1|2|G|722
5DGE|1|2|G|723
5DGE|1|2|C|724
5DGE|1|2|U|725
5DGE|1|2|C|726
5DGE|1|2|U|727
5DGE|1|2|U|728
5DGE|1|2|G|729
5DGE|1|2|G|730
5DGE|1|2|C|731
5DGE|1|2|G|732
5DGE|1|2|A|733
5DGE|1|2|A|734
5DGE|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A