HL_5DGE_140
3D structure
- PDB id
- 5DGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CCAUGGAAGUCGG
- Length
- 13 nucleotides
- Bulged bases
- 5DGE|1|5|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGE_140 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2978
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DGE|1|5|C|1238
5DGE|1|5|C|1239
5DGE|1|5|A|1240
5DGE|1|5|U|1241
5DGE|1|5|G|1242
5DGE|1|5|G|1243
5DGE|1|5|A|1244
5DGE|1|5|A|1245
5DGE|1|5|G|1246
5DGE|1|5|U|1247
5DGE|1|5|C|1248
5DGE|1|5|G|1249
5DGE|1|5|G|1250
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m2
- 60S ribosomal protein L12-A
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