HL_5DGE_201

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUCCGAUUUUUUCGUAC

Length

17 nucleotides

Bulged bases

5DGE|1|6|G|660, 5DGE|1|6|U|667

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|6|G|656
5DGE|1|6|U|657
5DGE|1|6|C|658
5DGE|1|6|C|659
5DGE|1|6|G|660
5DGE|1|6|A|661
5DGE|1|6|U|662
5DGE|1|6|U|663
5DGE|1|6|U|664
5DGE|1|6|U|665
5DGE|1|6|U|666
5DGE|1|6|U|667
5DGE|1|6|C|668
5DGE|1|6|G|669
5DGE|1|6|U|670
5DGE|1|6|A|673
5DGE|1|6|C|674

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d1

40S ribosomal protein S21-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A